Cheesy Bacon Mini Egg Muffins Recipe (2025)

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posted by Michelle Gothon Mar 17, 2015 (updated Apr 7, 2022)

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These Cheesy Bacon Mini Egg Muffins are the perfect make-ahead breakfast! Pop them in the freezer and reheat in a few seconds for breakfast on the go.

My son is a serious sleepyhead, and I stillhesitate to wake him up most mornings. Although he’s not a baby any longer, the phrase “never wake a sleeping baby” is permanently lodged in my brain! Lucky for me, he wakes up hungry and loves homemade breakfast like these Mini Egg Muffins!

Cheesy Bacon Mini Egg Muffins Recipe (1)

Over time, I discovered that these Mini Egg Muffins were not only a quick breakfast, they’re also useful for low carb meal prep, and even easy dinners! If my son didn’t like what we were having, I’d pop in a few of these egg bites from the freezer, add fruit and veggies, and dinner would be served.

“So excited these came out terrific! Thank you for the recipe. I followed your recipe using…shredded Parmesan & Swiss, ham, sausage lightly sautéed w/ garlic powder, chopped red pepper & green onion.”

Cynthia

I bake these in the oven with a mini muffin tin. In my opinion, this is the lowest maintenance way to make mini egg muffins without special equipment.

Cheesy Bacon Mini Egg Muffins Recipe (2)

But, if you have a sous vide machine, you can use it to make these muffins into a copycat of Starbucks Sous Vide Egg Bites, with way less money than buying them there!

I love the custardy texture of their Bacon Gruyere Egg Bites, but honestly, I definitely do not like the price! They cost a small fortune. If you decide to make these in the sous vide, you will need a silicone mold for egg bites that seals and a bit more time. Use gruyere cheese and pop them in for about an hour at 145 degrees Fahrenheit, and allow to cool completely before popping them from the mold.

Cheesy Bacon Mini Egg Muffins Recipe (3)

Ingredients

For this easy recipe, you will need:

  • Whole Eggs
  • Bacon
  • Shredded Cheese
  • Milk
  • Salt and Pepper

Substitutions:

  • Substitute chopped deli ham or turkey for bacon. A great option for a healthy breakfast!
  • Add chopped red pepper or any color bell peppers, green onions, diced onion,
  • Substitute egg whites for some or all of the whole eggs. You will need roughly 2.5 cups of egg white or egg beaters solution.
  • Add 1-2 teaspoons of hot sauce for slightly spicy
  • Substitute unsweetened coconut milk for the milk.
  • I like to use cheddar cheese, gruyere cheese and pepperjack cheese. Truly, use the cheese you have on hand!
Cheesy Bacon Mini Egg Muffins Recipe (4)

Equipment

I love using this oversized mini muffin pan from Amazon. Having a pan with more cavities allows you to get this recipe done super quick!

Storage

Store them in the refrigerator in an airtight container or plastic bag for up to three days. These bacon egg bites will keep in the freezer for 2-3 months.

If you love this Mini Egg Muffin recipe, I think you’ll also enjoy my Healthy Vegetarian Egg Muffins recipe!

Cheesy Bacon Mini Egg Muffins Recipe (5)

Yield: 24 mini egg muffins

Prep Time: 10 minutes

Cook Time: 12 minutes

Additional Time: 10 minutes

Total Time: 32 minutes

Easy to make mini egg muffins. Perfect for a quick breakfast. Mix it up with different cheese, veggies, and meat!

Ingredients

  • 8 large eggs, beaten
  • ¼ cup milk
  • ½ teaspoon salt
  • ¼ teaspoon black pepper
  • ¼ cup shredded cheese (cheddar, gruyere or swiss)
  • 4 slices bacon, cooked and crumbled

Instructions

  1. Pre-heat oven to 350 degrees, grease a mini muffin pan.
  2. In a mixing bowl, crack eggs and beat until yolks are broken and well mixed. Add in milk and whip with a whisk until fluffy. Add a dash of salt and pepper.
  3. In the muffin pan, layer the shredded cheese and chopped bacon into the cups so that they are about ⅓ of the way full.
  4. Pour egg mixture into each cup, until cups are about ⅔ full.
  5. Bake for 10-12 minutes until egg muffins are solid. No liquid should remain.
  6. Allow to cool before popping out of pan.

Notes

  • Freeze these muffins single-layer in a quart sized zip lock bag. To reheat, microwave for 20-30 seconds on high.
Nutrition Information

Yield 24Serving Size 1
Amount Per ServingCalories 39Total Fat 3gSaturated Fat 1gTrans Fat 0gUnsaturated Fat 1gCholesterol 65mgSodium 109mgCarbohydrates 0gFiber 0gSugar 0gProtein 3g

The nutrition for this recipe is calculated by an app and may be incorrect.

Did you make this recipe?

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(This post contains an affiliate link).

If you love this recipe, I think also enjoy these other breakfast recipes and egg recipes on my site:

  • Fried Egg Chilaquiles Verdes
  • Eggs in Hell (Italian Shakshuka)
  • Avocado Toast with Egg
  • Keto Mexican Breakfast Burrito
Cheesy Bacon Mini Egg Muffins Recipe (6)
Cheesy Bacon Mini Egg Muffins Recipe (7)
Cheesy Bacon Mini Egg Muffins Recipe (8)
Cheesy Bacon Mini Egg Muffins Recipe (9)
Cheesy Bacon Mini Egg Muffins Recipe (10)

Breakfast

originally published on Mar 17, 2015 (last updated Apr 7, 2022)

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Cheesy Bacon Mini Egg Muffins Recipe (2025)

FAQs

How do you keep egg muffins from sticking to muffin pans? ›

Preheat the oven to 350ºF and grease a non-stick muffin pan (affiliate link). Alternatively, you can use paper liners or silicone liners to prevent sticking.

Why are my egg muffins spongy? ›

Egg muffins can get spongy if there is too much liquid in them. It's best to saute any veggies before adding them to your egg muffins to prevent them from getting a spongy texture. How long do you put egg muffins in the oven? You put egg muffins in the oven for 15- 20 minutes at 350 F.

How do you cook eggs and Bacon in a muffin pan? ›

Using a muffin/cupcake pan, line the holes with a slice of bacon, pressing the bacon around the sides of the hole, not on the bottom. Crack one egg into each hole. Sprinkle with salt and pepper and cheese if desired. Bake at 350 degrees for 20 minutes or until the egg is the doneness you like.

Why do my egg muffins collapse? ›

All-purpose flour and baking powder – The secret ingredients! They help the egg muffins create a light and puffy–yet stable–structure as they bake. Without them, the egg muffins will collapse inside the muffin cups.

What are the best liners for egg muffins? ›

Silicone muffin liners are best because they release the egg muffins easily, clean up quickly and you don't need to grease them. Avoid paper liners as they are difficult to remove from baked muffins. If silicone liners are not available, generously spray muffin tin with cooking spray.

Why are my egg muffins rubbery? ›

If your muffins turned out rubbery this means that you left them in the oven for too long. When eggs are overcooked they become dry and rubbery. This is why it's important to use a timer when cooking.

Can you use paper cupcake liners for egg bites? ›

Of course you can use your muffin tin to bake these but one thing that makes these really easy, from preparation to clean up, are THESE (<affiliate) parchment paper cupcake wrappers that I found. Note: I would NOT recommend making these using regular cupcake wrappers.

What happens if you add too many eggs to muffins? ›

If there isn't enough egg, your batter or dough may not be able to hold its structure or could end up overly dry or dense. On the other hand, if there is too much egg, your baked goods could lose their shape due to excess liquid, or have a rubbery (or even overly cakey) texture depending on the recipe.

Do you put bacon or eggs in pan first? ›

Once smoke begins to clear, place the bacon in the pan. Cook over low heat for about 1 minute. As the bacon starts releasing fat, flip and add in eggs. Cover with lid and cook for about 2 minutes.

Can you bake bacon and eggs in the same pan? ›

Remove sheet pan from oven and arrange bacon so that you have six wells where you can place the eggs. Crack eggs into the wells. Place bacon and eggs back into the oven and cook about 5 minutes or until eggs whites are set. Garnish with parsley.

What is the best pan for bacon and eggs? ›

The Hard Anodized Fry Pan, because of it's even heating and durability, is even better if you're looking to get a crispy sear on your bacon before throwing in some sunny-side-up eggs to finish. Because what's better than an egg cooked in bacon fat? Practically nothing.

What does it mean when muffins sink in the middle? ›

Muffin was underbaked and cell structure wasn't set. When the cell structure doesn't set, the air spaces created by the leavening in the recipe collapses, causing the muffin to sink. Oven temperatures vary over time. To insure the correct temperature each time you bake, always use an oven thermometer.

How to get baked egg off muffin pan? ›

To remove any baked-on residue on the top of the pan, grab a sturdy pan scraper. Combined with hot, soapy water, it will quickly remove even burnt-on bits. Rinse the pan thoroughly, then dry.

How to stop muffins from sticking to the pan? ›

The amount of fat in the muffin batter affects how easily the baked muffin can be removed from the pan. Lightly spray the bottom of each muffin cup with no-stick cooking spray or use paper or aluminum foil cup liners. Use aluminum foil cup liners. Spray the foil cup liners with no-stick cooking spray.

What can I use to make my muffins not stick? ›

There are many other ways to keep your muffins from getting stuck in the pan. If you prefer not to use butter, try one of these options: Cooking Spray - Vegetable oil sprays are a popular option for greasing baking pans and it will work with muffin tins as well.

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